PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.289090.1
Common NameCsa_1G573680, LOC101216855
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 319aa    MW: 34104.5 Da    PI: 6.0985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.289090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10168212554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Cucsa.289090.1 168 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 212
                     99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-15161222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-11161217No hitNo description
PROSITE profilePS5088816.526163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7168212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAGIPSEGLG DDFFEQMLAV PPSYGGAGGG DMVSLPMGLQ LGSGGGGGGN GGGMGMPLGL  60
NLEQGFLRQE RFREEVDGGH NSNSNNNASS SSTASSGITE RDSSMQHMTS LFPTFGHLQT  120
QQLRPPPPLH LHQPFHNQTN TGTVAAIPQP PQVRPRVRAR RGQATDPHSI AERLRRERIA  180
ERMKALQELV PSCNKTDRAA MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV AQLVADVPLS  240
SVEGEGIESG NNQQAWEKWS SDGTEQQVAK LMEEDVGAAM QFLQSKALCI MPISLASAIF  300
RTHQADPQIL VKPEMNTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-144LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-144LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135655.10.0PREDICTED: transcription factor UNE12-like isoform X1
SwissprotO227684e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0A0LYN00.0A0A0A0LYN0_CUCSA; Uncharacterized protein
STRINGPOPTR_0005s05500.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-55bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]